(D\u00e9sol\u00e9, la version fran\u00e7aise sera en-ligne d’ici peu.)<\/p>\n
The NGS data analysis is full. Thanks to everyone who registered. Looking forward to seeing you Friday. ##<\/p>\n Join us for a day long workshop at IRCM on Friday, July 8th, on next-generation (NGS) data analysis. This workshop is open to participants of all levels, and all backgrounds, including wet-lab biologists who have no experience in bioinformatics.<\/p>\n A nominal attendance fee (20$) will be charged to raise funds to cover the operating costs of MonBUG.\u00a0We’ll use the funds raised to cover the daily costs of running MonBUG (t-shirts, snacks and beverages for meetings, website hosting, …)<\/p>\n MonBUG is a registered non-profit. We’ll provide official receipts to those who request them. You can pay cash or by check. Credit card payments are a bit more complicated, but we’ll see if we can make arrangements.<\/p>\n Tentative schedule<\/strong><\/p>\n 9:30 – 10:30 Introduction to Unix, and the queuing system, on a computing cluster Don’t hesitate to advertise this event among your colleagues! The wiki for the workshop is under active construction, and will contain all the information about the event. ###<\/p>\n Le hackathon aura lieu dans le cadre du HackerFest du Startupfest. \u00a0Vous pouvez vous inscrire tout de suite sur le site du HackerFest.\u00a0Vous n\u2019avez qu\u2019\u00e0 choisir l\u2019option biohackathon lors de l\u2019inscription. Nous allons disposer d\u2019une tente dans le Vieux \u00a0Port de Montr\u00e9al pour 24 heures, avec\u00a0tout le n\u00e9cessaire fourni (courant, Internet, \u2026). Nous pourrons y travailler sur des d\u00e9fis bioinformatiques impliquant l\u2019apprentissage machine.<\/p>\n Il y a des frais d\u2019inscription de 15$, mais ces frais incluent le caf\u00e9, les collations et le petit d\u00e9jeuner. Le site sera\u00a0ouvert uniquement aux participants officiellement inscrits de vendredi 17:00 \u00e0 samedi 10:00. Vous devriez pouvoir entrer dans le site et participer au hackathon sans inscription apr\u00e8s samedi 10:00, mais je vous encourage \u00e0 vous inscrire officiellement pour soutenir l’\u00e9v\u00e9nement.<\/p>\n Il y aura 5 DREAM challenges.<\/p>\n The Digital Mammography DREAM Challenge\u00a0<\/a> \u00c0 la fin du hackathon, vous\u00a0pourrez pr\u00e9senter votre travail \u00e0 vos coll\u00e8gues. Nous d\u00e9ciderons les gagnants en se basant sur vos pr\u00e9sentations. Les DREAM challenges sont ouverts pendant plusieurs mois, donc vous n’avez pas \u00e0 partager tout votre code avec nous si vous ne voulez pas. Si vous voulez vous pouvez partager avec nous que votre rang sur le tableau des classements. Vous aurez aussi l’opportunit\u00e9 de partager avec nous votre l’ensemble de votre travail \u00e0 une r\u00e9union de MonBUG apr\u00e8s la fermeture des DREAMS challenges.<\/p>\n Le hackathon est tenu en collaboration avec Bricobio de de Kevin Chen. Merci \u00e0 Kevin de nous avoir invit\u00e9!<\/p>\n La plupart d’entre nous proviennent du monde acad\u00e9mique, mais les organisateurs du Startupfest ont enthousiasment encourag\u00e9 notre participation \u00e0 l’\u00e9v\u00e9nement. Il y aura d’excellents programmeurs sur place, et de belles opportunit\u00e9s de collaboration.<\/p>\n ###<\/p>\n Nous allons reprendre nos rencontres r\u00e9guli\u00e8res en septembre. (D\u00e9sol\u00e9, la version fran\u00e7aise sera en-ligne d’ici peu.) The NGS data analysis is full. Thanks to everyone who registered. Looking forward to seeing you Friday. If you’d still like to attend, you can always put yourself on the waiting list on Meetup (http:\/\/meetup.com\/monbug), and hope someone cancels. ## Join us for a day long workshop […]<\/p>\n","protected":false},"author":3,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[5],"tags":[],"class_list":{"0":"post-1327","1":"post","2":"type-post","3":"status-publish","4":"format-standard","6":"category-page-accueil"},"_links":{"self":[{"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/posts\/1327","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/comments?post=1327"}],"version-history":[{"count":11,"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/posts\/1327\/revisions"}],"predecessor-version":[{"id":2018,"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/posts\/1327\/revisions\/2018"}],"wp:attachment":[{"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/media?parent=1327"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/categories?post=1327"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/monbug.ca\/fr\/wp-json\/wp\/v2\/tags?post=1327"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}
\nIf you’d still like to attend, you can always put yourself on the waiting list on Meetup (http:\/\/meetup.com\/monbug<\/a>), and hope someone cancels.<\/p>\n
\n10:30 – 11:00 Overview of the main file types for NGS
\n11:00 – 12:00 Introduction to the main steps of an RNA-Seq analysis
\n12:00 – 12:45 Lunch break
\n12:45 – 13:15 A practice RNA-Seq analysis, using the Unix command line
\n13:15 – 13:45 Introduction to ChIP-Seq analysis, using the Unix command line
\n13:45 – 14:15 A practice ChIP-Seq analysis, using the Unix command line
\n14:15 – 14:45 Introduction to Exome-Seq analysis, using the Unix command line
\n14:45 – 15:15 A practice Exome-Seq analysis
\n15:15 – 16:15 A few examples of how use Galaxy, a Web interface for the most commonly used tools in NGS data analysis
\n16:15 – 17:00 Question period.<\/p>\n
\nFeel free to bring your own dataset, and to prepare questions for the workshop.<\/p>\n
\nMonBUG workshop – June 8th 2016<\/p>\n
\nhttp:\/\/www.startupfestival.com\/hackerfest<\/a><\/p>\n
\nDisease Module Identification DREAM Challenge\u00a0<\/a>
\nRespiratory Viral DREAM Challenge<\/a>*
\nENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
\n<\/a>ICGC-TCGA DREAM Somatic Mutation Calling RNA Challenge (SMC-RNA)<\/a><\/p>\n
\nSi vous voulez partager votre recherche avec nous \u00e0 l’une de nos r\u00e9unions en 2016-2017, ou si vous voulez sugg\u00e9rer un pr\u00e9sentateur, n’h\u00e9sitez pas \u00e0 contacter un des organisateurs.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"